Monday, October 03, 2011

9:00 - 9:30 Jay Shendur Welcome and Opening Remarks

9:30 - 10:20 Radoje Drmanac (Complete Genomics, Inc.) "Complete Genomics' approach for sequencing thousands of human genomes and determining accurate genome variant lists"

10:45 - 11:35 Chirs Saunders (Illumina, Inc.) "Illumina Sequence Analysis: From Imaging to Somatic Variant Discovery"

12:00 - 12:50 Jim Kent (UCSC) "Visualizing large data sets from next generation sequencing."

2:30 - 3:20 David Haussler (UCSC) "Cancer and Evolutionary Genomics"

4:00 - 4:50 Rafael Irizarry (Johns Hopkins University) "Some challenges related to next-generation sequencing data"

Tuesday, October 04, 2011

9:00 - 9:50 Daniel Zerbino (UCSC) "A medley of graph based algorithms for sequence analysis"

10:15 - 11:05 Srinivas Aluru (Indian Institute of Technology, Bombay) "Error Correction Algorithms for Next Generation Sequencing"

11:30 - 12:20 Moran Yassour (Broad Institute) "Characterizing transcriptomes from high throughput sequencing data: from yeast to mammals"

2:00 - 2:50 Phil Green (University of Washington) "Next-gen read alignment"

3:15 - 4:05 Christopher Lee (UCLA) "Phenotype sequencing: identifying the genes that cause a phenotype directly from pooled sequencing of independent mutants"

Wednesday, October 05, 2011

9:00 - 9:50 Elaine Mardis (Washington University in St.Louis) "Charting tumor genome evolution from massively parallel sequencing data"

10:15 - 11:05 Mark Depristo (Broad Institute) "Data processing and analysis of genetic variation using next-generation DNA sequencing"

11:30 - 12:20 Can Alkan (University of Washington) "Next-generation sequence characterization of complex genome structural variation"

2:30 - 3:20 Jonas Korlach (Pacific Biosciences) "Harnessing Kinetic Information in Single-Molecule, Real-Time (SMRT™) Sequencing"

Thursday, October 06, 2011

9:00 - 9:50 David Jaffe (Broad Institute) "High-quality draft assemblies of large and small genomes from massively parallel DNA sequence data"

10:15 - 11:05 Ruiqiang Li (Novogene) "Development of SOAP software package for next-generation sequencing data analysis"

11:30 - 12:20 Cristina Pop (Stanford University) "Analysis of the dynamics and features of translational regulation"

2:30 - 3:20 Steven Jones (BC Cancer Agency) "Identification of recurrent mutational events in human cancers"

4:00 - 4:50 Earl Hubbell (Life Technologies) "Computational Challenges for Scalable Semiconductor Sequencing"