HAplotype inference using Reference and Sequencing tecHnology (HARSH) is a method to infer the haplotype using haplotype reference panel and high throughput sequencing data. It is based on a novel probabilistic model and Gibbs sampler method.

HARSH was created by Wen-Yun Yang, Farhad Hormozdiari, Zhanyong Wang, Bogdan Panasiuc and Eleazar Eskin.


Pre-compiled versions of the program can be downloaded from the links below.

Platform File
Linux download
Mac OS X download
Microsoft Windows available upon request

Wrapper for converting BAM/VCF file into HARSH file format

Python code download

Instruction can be found here

Thanks to Farhad Hormozdiari !