HAplotype inference using Reference and Sequencing tecHnology (HARSH) is a method to infer the haplotype using haplotype reference panel and high throughput sequencing data. It is based on a novel probabilistic model and Gibbs sampler method.
Pre-compiled versions of the program can be downloaded from the links below.
Wrapper for converting BAM/VCF file into HARSH file format
Python code download
Instruction can be found here
Thanks to Farhad Hormozdiari !